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Test Code TALMF T-Cell Acute Lymphoblastic Leukemia/Lymphoma (ALL), Specified FISH, Varies


Ordering Guidance


This test is intended for instances when limited T-cell acute lymphoblastic leukemia/lymphoma (T-ALL) fluorescence in situ hybridization (FISH) probes are needed based on specific abnormalities or abnormalities identified in the diagnostic sample. The FISH probes to be analyzed must be specified on the ordering request. If targeted FISH probes are not included with this test order, test processing will be delayed and the test may be canceled and automatically reordered by the laboratory as TALAF / T-Cell Acute Lymphoblastic Leukemia/Lymphoma (ALL), FISH, Adult, Varies or TALFP / Pediatric T-Lymphoblastic Leukemia/Lymphoma panel, FISH, Varies?depending on the age of the patient.

 

At diagnosis, conventional cytogenetic studies (CHRBM / Chromosome Analysis, Hematologic Disorders, Bone Marrow) and a complete T-ALL FISH panel (either TALAF or TALFP) should be performed.

 

If a complete T-cell ALL FISH panel is preferred for an adult patient who is 31 years or older, order TALAF / T-Cell Acute Lymphoblastic Leukemia/Lymphoma (ALL), FISH, Adult, Varies.

 

If a complete T-cell ALL FISH panel is preferred for a pediatric patient who is 30 years or younger, order TALFP / Pediatric T-Lymphoblastic Leukemia/Lymphoma panel, FISH, Varies.

 

If this test is ordered and the laboratory is informed that the patient is on a Children's Oncology Group (COG) protocol, this test will be canceled and automatically reordered by the laboratory as COGTF / T-Cell Acute Lymphoblastic Leukemia/Lymphoma (ALL), Children's Oncology Group Enrollment Testing, FISH, Varies.

 

If the patient clinically relapses, a conventional chromosome study is useful to identify cytogenetic changes in the neoplastic clone or the possible emergence of a new therapy-related myeloid clone.

 

For patients with T-cell lymphoma, order TLPDF / T-Cell Lymphoma, Diagnostic FISH, Varies.

 

For testing paraffin-embedded tissue samples from patients with T-lymphoblastic leukemia/lymphoma (T-LBL), order TLBLF / T-Cell Lymphoblastic Leukemia/Lymphoma, FISH, Tissue. If a paraffin-embedded tissue sample is submitted for this test, this test will be canceled and TLBLF will be added and performed as the appropriate test.



Additional Testing Requirements


At diagnosis, conventional cytogenetic studies (CHRBM / Chromosome Analysis, Hematologic Disorders, Bone Marrow) and a complete TALAF / T-Cell Acute Lymphoblastic Leukemia/Lymphoma (ALL), FISH, Adult, Varies or TALFP / Pediatric T-Lymphoblastic Leukemia/Lymphoma panel, FISH, Varies? should be performed, depending on patient's age. If there is limited specimen available, only fluorescence in situ hybridization testing will be performed.



Shipping Instructions


Advise Express Mail or equivalent if not on courier service.



Necessary Information


1. A list of probes requested for analysis is required. Probes available for this test are listed in the Testing Algorithm section.

2. A reason for testing must be provided. If this information is not provided, an appropriate indication for testing may be entered by Mayo Clinic Laboratories.

3. A flow cytometry and/or a bone marrow pathology report should be submitted with each specimen. The laboratory will not reject testing if this information is not provided, but appropriate testing and interpretation may be compromised or delayed.



Specimen Required


Submit only 1 of the following specimens:

 

Preferred

Specimen Type: Bone marrow

Container/Tube:

Preferred: Yellow top (ACD)

Acceptable: Green top (sodium heparin) or lavender top (EDTA)

Specimen Volume: 2 to 3 mL

Collection Instructions:

1. It is preferable to send the first aspirate from the bone marrow collection.

2. Invert several times to mix bone marrow.

3. Send bone marrow specimen in original tube. Do not aliquot.

 

Acceptable

Specimen Type: Whole blood

Container/Tube:

Preferred: Yellow top (ACD)

Acceptable: Green top (sodium heparin) or lavender top (EDTA)

Specimen Volume: 6 mL

Collection Instructions:

1. Invert several times to mix blood.

2. Send whole blood specimen in original tube. Do not aliquot.


Secondary ID

614323

Useful For

Detecting recurrent common chromosome abnormalities associated with T-cell acute lymphoblastic leukemia/lymphoma (T-ALL) using client-specified probe set(s)

 

An adjunct to conventional chromosome studies in patients with T-ALL

 

Evaluating specimens in which standard cytogenetic studies are unsuccessful

 

Identifying and tracking known chromosome abnormalities in patients with T-ALL and monitoring response to therapy

 

This test should not be used to screen for residual T-ALL

Testing Algorithm

This test includes a charge for the probe application, analysis, and professional interpretation of results for one probe set (2 individual fluorescence in situ hybridization [FISH] probes). Additional charges will be incurred for all reflex or additional probe sets performed. Analysis charges will be incurred based on the number of cells analyzed per probe set. If no cells are available for analysis, no analysis charges will be incurred.

 

This test is performed using client-specified FISH probes and is not intended as a panel test. Specific probes must be listed in the probe request field. Reflex probes can be performed when appropriate if specified in the order request field.

 

When specified, any of the following probes will be performed:

1p33 rearrangement or STIL deletion, request probe TAL1/STIL

t(5;14)(q35;q32) or TLX3::BCL11B fusion, request probe TLX3/BCL11B

t(5q32;var) or PDGFRB rearrangement, request probe PDGFRB break-apart

t(7q34;var) or TRB rearrangement, request probe TRB break-apart

t(6;7)(q23;q34) or TRB:MYB fusion, request probe MYB/TRB

t(7;10)(q34;q24) or TRB::TLX1 fusion, request probe TRB/TLX1

t(7;11)(q34;p15) or TRB::LMO1 fusion, request probe TRB/LMO1

t(7;11)(q34;p13) or TRB::LMO2 fusion, request probe TRB/LMO2

t(9p24.1;var) or JAK2 rearrangement, request probe JAK2 break-apart

ABL1 amplification or t(9;22)(q34;q11.2), request probe ABL1/BCR

t(9q34;var) or ABL1 rearrangement, request probe ABL1 break-apart

t(10;11)(p12;q14) or PICALM:: MLLT10 fusion, request probe MLLT10/PICALM

t(11q23;var) or KMT2A rearrangement, request probe KMT2A break-apart

t(4;11)(q21;q23) or KMT2A::AFF1 fusion, request probe AFF1/KMT2A

t(6;11)(q27;q23) or KMT2A::AFDN fusion, request probe AFDN/KMT2A

t(9;11)(p22;q23) or KMT2A::MLLT3 fusion, request probe MLLT3/KMT2A

t(10;11)(p12;q23) or KMT2A::MLLT10 fusion, request probe MLLT10/KMT2A

t(11;19)(q23;p13.3) or KMT2A::MLLT1 fusion, request probe KMT2A/MLLT1

t(11;19)(q23;p13.1) or KMT2A::ELL fusion, request probe KMT2A/ELL

t(14q11.2;var) or TRA rearrangement, request probe TRA break-apart

t(8;14)(q24.1;q11.2) or TRA::MYC fusion, request probe MYC/TRA

t(10;14)(q24;q11.2) or TRA::TLX1 fusion, request probe TLX1/TRA

t(11;14)(p15;q11.2) or TRA::LMO1 fusion, request probe LMO1/TRA

t(11;14)(p13;q11.2) or TRA::LMO2 fusion, request probe LMO2/TRA

-17/17p-, request probe TP53/D17Z1

 

Appropriate ancillary probes may be performed at consultant discretion to render comprehensive assessment. Any additional probes will have the results included within the final report and will be performed at an additional charge.

Method Name

Fluorescence In Situ Hybridization (FISH)

Reporting Name

ALL (T-cell), Specified FISH

Specimen Type

Varies

Specimen Minimum Volume

Bone marrow: 1 mL; Whole blood: 2 mL

Specimen Stability Information

Specimen Type Temperature Time
Varies Ambient (preferred)
  Refrigerated 

Reject Due To

All specimens will be evaluated at Mayo Clinic Laboratories for test suitability.

Reference Values

An interpretive report will be provided.

Day(s) Performed

Monday through Friday

Report Available

7 to 10 days

Performing Laboratory

Mayo Clinic Laboratories in Rochester

Test Classification

This test was developed and its performance characteristics determined by Mayo Clinic in a manner consistent with CLIA requirements. It has not been cleared or approved by the US Food and Drug Administration.

CPT Code Information

88271x2, 88275x1, 88291x1-FISH Probe, Analysis, Interpretation; 1 probe set

88271x2, 88275x1 - FISH Probe, Analysis; each additional probe set (if appropriate)

LOINC Code Information

Test ID Test Order Name Order LOINC Value
TALMF ALL (T-cell), Specified FISH In Process

 

Result ID Test Result Name Result LOINC Value
614325 Result Summary 50397-9
614326 Interpretation 69965-2
614327 Result Table 93356-4
614328 Result 62356-1
GC134 Reason for Referral 42349-1
GC135 Probes Requested 78040-3
GC136 Specimen 31208-2
614329 Source 31208-2
614330 Method 85069-3
614331 Additional Information 48767-8
614332 Disclaimer 62364-5
614333 Released By 18771-6

Reflex Tests

Test ID Reporting Name Available Separately Always Performed
TALMB Probe, Each Additional (TALMF) No, (Bill Only) No

Forms

If not ordering electronically, complete, print, and send a Hematopathology/Cytogenetics Test Request (T726) with the specimen.